PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009626659.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92487.8 Da    PI: 5.9417
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009626659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.5e-191977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_009626659.1 19 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                    5679*****************************************************97 PP

2START176.81.3e-551643722205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d+  W ++++++++l+v s+g  g+++l 
  XP_009626659.1 164 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHSCSGVASRACGLVGLEPT-RVAEILKDRSSWFRDCRAVDVLNVMSTGsgGTIELL 257
                     7899******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+  Ry+   ++g++v++++S++++q+ p+    +++vRaellpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_009626659.1 258 YMQLYAPTTLAPaRDFWLMRYTSVTEDGSLVVCERSLNNTQNGPSmppVQNFVRAELLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 352
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++  ++t++a+l+++++
  XP_009626659.1 353 ESSTVLSQRTTMAALRHLRQ 372
                     ***************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-19977IPR009057Homeodomain-like
PROSITE profilePS5007115.7751478IPR001356Homeobox domain
SMARTSM003891.2E-151682IPR001356Homeobox domain
SuperFamilySSF466895.99E-171880IPR009057Homeodomain-like
CDDcd000861.26E-161979No hitNo description
PfamPF000461.6E-162077IPR001356Homeobox domain
CDDcd146862.38E-671110No hitNo description
PROSITE profilePS5084825.829154382IPR002913START domain
CDDcd088756.21E-78158373No hitNo description
SMARTSM002341.5E-39163373IPR002913START domain
SuperFamilySSF559614.81E-36164374No hitNo description
PfamPF018529.7E-53164372IPR002913START domain
Gene3DG3DSA:3.30.530.205.4E-22164369IPR023393START-like domain
PfamPF086706.1E-50698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MMAVTSACKD SKMGMDNGKY VRYTPEQVEA LERLYHECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENGFFR  120
QQTQTAALTT TDNNSCESVV TSGQQNVSAQ RPPRDASPAG LLSLAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIIA ISHSCSGVAS RACGLVGLEP TRVAEILKDR SSWFRDCRAV  240
DVLNVMSTGS GGTIELLYMQ LYAPTTLAPA RDFWLMRYTS VTEDGSLVVC ERSLNNTQNG  300
PSMPPVQNFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTVLSQ  360
RTTMAALRHL RQISQEISHP TVTGWGRRPA ALRALGQRLS KGFNEAVNGF TDEGWSMLES  420
DGIDDVTLLV NSSPSKLMGA NISYANGFPS MSSAVLCAKA SMLLQNVPPV ILLRFLREHR  480
SEWADSGIDA YSAAAVKAGP CSIPVTRTGS FGGQIILPLS HTIEHEEFME VIRLESIGHY  540
QDDMIMPGDI FLLQLCSGVD ENAVGTCAEL VFAPIDASFA DDAPLLPSGF RIIPLDSKAD  600
ASSPNRTLDL ASTLEVGPAG SRPNGDYSKN SGSTKSVMTI AFQFAFEIHL QENIAAMARQ  660
YVRSIISSVQ RVALALSPSR LGSLPGLRSP PGTPEAQTLA RWICQSYRFF LGVELLKSVG  720
GGSESILKEI WHHSDALMCC SLKALPVFTF ANEAGLDMLE TTLVSLQDIT LEKIFDDNGR  780
KTLFSELPQI MQQGFACLQG GICLSSMGRP ISYERAVAWK VLNEEEDPHC LCFMFINWSF  840
V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626659.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
RefseqXP_016442710.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLM1CUD50.0M1CUD5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000749340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein